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If the user in the config file and what you see on github are different, my next guess is you're using the SSH or GPG key of the account shown on github. See https://github.com/settings/keys
Remove that line and try again. I have no experience actually using manger so I cant help there. Here is its github page: https://github.com/GitCredentialManager/git-credential-manager
But in the case of SSH it is usually managed by your system. Are you using SSH to connect to the git repo? So when you cloned it was the link https://github.com/ or [email protected]? You can check in $REPO/.git/config the remote option.