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The reason I originally looked into this was to see if there's a way to use sqlite in wasm with indexeddb as the storage backend, getting a full SQL engine in the browser (like WebSQL, but actually using web standard API). Here is sqlite compiled to wasm, but only with the in-memory database, which is only of limited use. My conclusion was that it might be possible, but needs a ton of work in C interfacing with web APIs through emscripten, which is not fun at all.
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There's a Rust project that's an SQL engine on top of an arbitrary key-value store too, GlueSQL https://github.com/gluesql/gluesql (and it has a sled backend)
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Have you looked into absurd-sql? it does exactly that: https://github.com/jlongster/absurd-sql/
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You may be able to have something working by implementing a VFS. (https://github.com/rkusa/sqlite-vfs)