A BOSH template merge tool (by geofffranks)
The CI/CD has a service account with permissions to all envs, and during deployment it renders the config files and inserts the "real" values by pulling it from Vault/KMS. Something very simple is Spruce, which is actually a powerful general templating tool but I've seen it only used for vault secrets so far.
A tool for secrets management, encryption as a service, and privileged access management
There's a central key management service. Hashicorp Vault is pretty much the de-facto standard and most other tools integrate nicely with this. The only exception I've seen if companies are fully invested into a single cloud provider, in which case their cloud native alternative is used (AWS KMS, GCP KMS, Azure Keyvault). Even then, sometimes Vault is used as a frontend with the Cloud KMS as backing store.
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SSH Keys Hosting
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