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Other tools you can look at for the data layer are MyBatis (https://mybatis.org/mybatis-3/) and JOOQ (https://www.jooq.org) they put you a little closer to the database than JPA/Hibernate.
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As far as keeping track of domain changes you can store DDL files in version control like you mention or use tools like Flyway (https://flywaydb.org) or Liquidbase (https://liquibase.org) which takes care of database migrations.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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