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I migrated to Trilium, and it's served me well as a hierarchical note taking software, plus it has other functionalities that were interesting to me, like scripting.
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CodeRabbit
CodeRabbit: AI Code Reviews for Developers. Revolutionize your code reviews with AI. CodeRabbit offers PR summaries, code walkthroughs, 1-click suggestions, and AST-based analysis. Boost productivity and code quality across all major languages with each PR.
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You could try wikmd. It's file based and uses Markdown. Fully open-source!
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OpenNote
OpenNote was built to be an open web-based alternative to Microsoft OneNote (T) and EverNote.
OpenNote markets itself as an alternative to OneNote, tho I haven't used it myself.
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Joplin
Joplin - the privacy-focused note taking app with sync capabilities for Windows, macOS, Linux, Android and iOS.
Then there's Joplin, which is more like Evernote.
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Also, I've always enjoyed etherpad, because of the real-time save/versioning feature.
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github-orgmode-tests
This is a test project where you can explore how github interprets Org-mode files
You might like org-mode. It is very extensive in features: https://orgmode.org/
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I don't know OneNote. But I use https://zim-wiki.org/ for years, good plugins like source code, export, git integration and attachments
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives