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Joplin
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This is a test project where you can explore how github interprets Org-mode files
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I migrated to Trilium, and it's served me well as a hierarchical note taking software, plus it has other functionalities that were interesting to me, like scripting.
You could try wikmd. It's file based and uses Markdown. Fully open-source!
OpenNote markets itself as an alternative to OneNote, tho I haven't used it myself.
Then there's Joplin, which is more like Evernote.
Also, I've always enjoyed etherpad, because of the real-time save/versioning feature.
You might like org-mode. It is very extensive in features: https://orgmode.org/
I don't know OneNote. But I use https://zim-wiki.org/ for years, good plugins like source code, export, git integration and attachments