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If you're comfortable with the command line, pandoc is probably the standard tool for this.
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zim-desktop-wiki-markdown
pfalcon's fork of Zim desktop wiki project - quick Markdown format support for notebooks, usability improvements, etc. Everything WIP.
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SonarLint
Clean code begins in your IDE with SonarLint. Up your coding game and discover issues early. SonarLint is a free plugin that helps you find & fix bugs and security issues from the moment you start writing code. Install from your favorite IDE marketplace today.
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Sorry for the late reply, but the include-files Lua filter here sounds good for this. I've been getting into writing these kind of filters lately myself and its adding a whole new dimension of possibilities for whats possible with Pandoc.
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Hence, a higher number means a more popular project.