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There is also an ibus table for LaTeX (including a preview popup): https://github.com/ibus/ibus/wiki/LaTeX
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
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I'm saying this because i have a "similar" setup, i'm running a tool called Espanso, which i don't know how it compares to AutoKey, but it simply replaces arbitrary text when written, with support for custom actions as well.
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espanso-mega-pack
A collection of curated home built packages for the cross-platform text expander Espanso
I've developed a package for it and my solution was to instead of using \ to start the trigger, using : in the beginning and in the end, because there might be partial matches that would trigger the replacement (e.g.: vartheta and varpi).
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There was something like this for all operating systems here. Not sure if it still works.
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