Which programming language to focus on for my PhD journey in bioinformatics?

This page summarizes the projects mentioned and recommended in the original post on /r/rust

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  • PyO3

    Rust bindings for the Python interpreter

    Python first, you will be able to experiment quickly with the notebooks. Then maybe write (or rewrite) some modules in Rust that you can expose as python modules, with py03 and maturin. Feel free to publish useful packages on both crates.io and pypi.org, so you can contribute to Python and Rust ecosystems.

  • warehouse

    The Python Package Index

    Python first, you will be able to experiment quickly with the notebooks. Then maybe write (or rewrite) some modules in Rust that you can expose as python modules, with py03 and maturin. Feel free to publish useful packages on both crates.io and pypi.org, so you can contribute to Python and Rust ecosystems.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  • maturin

    Build and publish crates with pyo3, rust-cpython and cffi bindings as well as rust binaries as python packages

    Python first, you will be able to experiment quickly with the notebooks. Then maybe write (or rewrite) some modules in Rust that you can expose as python modules, with py03 and maturin. Feel free to publish useful packages on both crates.io and pypi.org, so you can contribute to Python and Rust ecosystems.

  • crates.io

    The Rust package registry

    Python first, you will be able to experiment quickly with the notebooks. Then maybe write (or rewrite) some modules in Rust that you can expose as python modules, with py03 and maturin. Feel free to publish useful packages on both crates.io and pypi.org, so you can contribute to Python and Rust ecosystems.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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