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On Linux: AppArmor or SeLinux (never set it to be "permissive"!). These are not anti-virus software, but are mandatory access control systems. Most distributions include one or the other out of the box. There is ClamAV, but it doesn't necessarily protect the local machine. Mainly use it if you risk cross-contamination (e.g. you are hosting a SAMBA share or an email server.)
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.