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All NFT modifications must happen through the Bubblegum program.
The DAS indexer listens to all Bubblegum transactions, parses them, and updates an off-chain database. For example, when a compressed NFT is minted the indexer will parse that transaction and extract all of the NFT info (name, collection, owner). If a tree was never seen before or it is missing an update, the indexer will fetch the tree's transaction history and reconstruct the state.The indexer code can be found here.
Helius Compression Examples
Metaplex Compression Examples
Solana Account Compression Repo