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While preparing the Bobkonf tutorial I looked into some of the double frees, which I had as well. These are due to a bug in gtk2hs, and work-arounds for them are in xdot-0.3.0.3 and ghc-vis-0.9.2.
So with cabal, I can make it work, as documented in the setup instructions for the tutorial, see https://github.com/nomeata/haskell-bytes-bobkonf2021
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