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The thing that pops right into my mind is the following issue: https://github.com/keras-team/keras/issues/13118 People are still reporting memory leaks when calling model.predict and I wouldn't be surprised if model.fit also leaked when called multiple times. Maybe this is a good starting point for your investigation. If this is unrelated, I'm sorry in forward.
Linked to the thread you shared is the following: https://github.com/ZwickyTransientFacility/scope/pull/187
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