vg
tools for working with genome variation graphs (by vgteam)
shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads (by chanzuckerberg)
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| vg | shasta | |
|---|---|---|
| 2 | 1 | |
| 1,055 | 269 | |
| 1.2% | - | |
| 9.4 | 9.1 | |
| 7 days ago | over 1 year ago | |
| C++ | C++ | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
vg
Posts with mentions or reviews of vg.
We have used some of these posts to build our list of alternatives
and similar projects.
-
VG v1.36.0 just released!
Just released! VG v1.36.0, available at https://github.com/vgteam/vg/releases/tag/v1.36.0 offers improvements vg clip, including an option for clipping out big deletion edges while skipping multiple specified alleles.
-
VG v1.34.0 Release!
Just out! vg v1.34.0 code-named "Arguello" is available now: https://github.com/vgteam/vg/releases/tag/v1.34.0
shasta
Posts with mentions or reviews of shasta.
We have used some of these posts to build our list of alternatives
and similar projects.
What are some alternatives?
When comparing vg and shasta you can also consider the following projects:
QuickQanava - :link: C++17 network / graph visualization library - Qt6 / QML node editor.
euler - A distributed graph deep learning framework.
bwa-mem2 - The next version of bwa-mem
seq - A high-performance, Pythonic language for bioinformatics
bowtie2 - A fast and sensitive gapped read aligner