Vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings (by vcflib)
octopus
Bayesian haplotype-based mutation calling (by luntergroup)
Our great sponsors
| Vcflib | octopus | |
|---|---|---|
| - | 1 | |
| 593 | 296 | |
| 1.5% | 1.0% | |
| 2.6 | 4.0 | |
| 29 days ago | 8 months ago | |
| C++ | C++ | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Vcflib
Posts with mentions or reviews of Vcflib.
We have used some of these posts to build our list of alternatives
and similar projects.
We haven't tracked posts mentioning Vcflib yet.
Tracking mentions began in Dec 2020.
octopus
Posts with mentions or reviews of octopus.
We have used some of these posts to build our list of alternatives
and similar projects.
-
genotyping tool
Check out octopus https://github.com/luntergroup/octopus
What are some alternatives?
When comparing Vcflib and octopus you can also consider the following projects:
libsequence - libsequence: a C++ class library for evolutionary genetic analysis
TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.
SeqAn - SeqAn's official repository.
megahit - Ultra-fast and memory-efficient (meta-)genome assembler
Wham - Structural variant detection and association testing
rare-disease-wf - (WIP) best-practices workflow for rare disease
cellSNP - Pileup biallelic SNPs from single-cell and bulk RNA-seq data
hap.py - Haplotype VCF comparison tools