scimax VS org-krita

Scimax should have out of box setup for bibliography, references etc. Anyway, regardless of what you use Emacs for, one step a time, would be my recommendation. Just start using it and solve problems as you experience them. It is better to add a single thing at a time when you need it, than to add 1000 different things because you think you will need them, and then not know what you have or what causes a problem.

https://github.com/wdavew/org-excalidraw is close. I discovered you can install Excalidraw from Chrome, and then it is like a local program. That is pretty amazing in itself. org-excalidraw indeed offers an org-link and way to make an excalidraw file from emacs, edited natively in an external excalidraw window. The svg preview does not work though if you use freehand lines in your image, and I was unable to install the npm packages on my Mac for some uninteresting reason related to DNS, but it did work in a node docker image. I find writing in excalidraw less advanced than in tools like Notability or PDFExpert. There are some artifacts in excalidraw from smoothing, or dangling pixels that I don't love. I forgot I had previously used https://github.com/lepisma/org-krita. Krita is a full drawing program, and this integrates into org-mode with image previews nicely. I am not that skilled in using it, and as a full drawing program, it has a learning curve. I wrote https://github.com/jkitchin/scimax/blob/master/scimax-inkscape.el to integrate inkscape into org-mode. It works, but I find inkscape slow to open, and I am not that skilled in using it.

Maybe give scimax a go?

Anyway, if you want something geared toward scientific usage, there is Scimax by J. Kitchin. There may be some others, but I am not aware off.

Apart from the ones already mention, John Kitchin's science-focused Scimacs is also an option.

Many packages like org-krita/org-yt/org-excalidraw/org-xournalpp allow custom files to be displayed inline by means of a custom link type. However, they don't work when the file is linked as an attachment, which makes me think that there may be a better way to achieve this.

I have been looking for a good way to get hand drawn images into my org notes. I use mermaid for generating some flowcharts/images, but sometimes there is no replacement for a physical drawing. The last thread I saw on this was from 2 years ago, and org-mark and org-krita were mentioned, and look good but both have limitations. I was wondering if anyone has made/found other packages to get a hand-drawn image work flow with org?

https://github.com/wdavew/org-excalidraw is close. I discovered you can install Excalidraw from Chrome, and then it is like a local program. That is pretty amazing in itself. org-excalidraw indeed offers an org-link and way to make an excalidraw file from emacs, edited natively in an external excalidraw window. The svg preview does not work though if you use freehand lines in your image, and I was unable to install the npm packages on my Mac for some uninteresting reason related to DNS, but it did work in a node docker image. I find writing in excalidraw less advanced than in tools like Notability or PDFExpert. There are some artifacts in excalidraw from smoothing, or dangling pixels that I don't love. I forgot I had previously used https://github.com/lepisma/org-krita. Krita is a full drawing program, and this integrates into org-mode with image previews nicely. I am not that skilled in using it, and as a full drawing program, it has a learning curve. I wrote https://github.com/jkitchin/scimax/blob/master/scimax-inkscape.el to integrate inkscape into org-mode. It works, but I find inkscape slow to open, and I am not that skilled in using it.

I haven't had a chance to try it out but you might be interested in https://github.com/lepisma/org-krita and https://gitlab.com/vherrmann/org-xournalpp

Would something like https://github.com/lepisma/org-krita work for you?

I've found that org-krita https://github.com/lepisma/org-krita works really well after a few tweaks, if you have a tablet.