sarek
galaxy
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sarek | galaxy | |
---|---|---|
5 | 4 | |
331 | 1,296 | |
7.9% | 6.4% | |
9.8 | 10.0 | |
6 days ago | 1 day ago | |
Nextflow | Python | |
MIT License | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
sarek
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GATK4 automated pipelines in existence?
The sarek pipeline from nf-core might interest you
galaxy
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Need for GUIs for bioinformatic tools?
Maybe it would help you to look at the galaxy project: GitHub main site
- Any bioinfo open source projects looking for contributors?
What are some alternatives?
nextflow - A DSL for data-driven computational pipelines
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Biopython - Official git repository for Biopython (originally converted from CVS)
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
galaxy_ng - Ansible Galaxy Server - Issues on https://forum.ansible.com Docs on https://galaxy-ng.readthedocs.io/
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
rnaseq-nf - A proof of concept of RNAseq pipeline
orfipy - Fast and flexible ORF finder
mag - Assembly and binning of metagenomes
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
configs - Config files used to define parameters specific to compute environments at different Institutions