sarek VS galaxy

Compare sarek vs galaxy and see what are their differences.

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sarek galaxy
5 4
331 1,296
7.9% 6.4%
9.8 10.0
6 days ago 1 day ago
Nextflow Python
MIT License GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

sarek

Posts with mentions or reviews of sarek. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-11.

galaxy

Posts with mentions or reviews of galaxy. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-17.

What are some alternatives?

When comparing sarek and galaxy you can also consider the following projects:

nextflow - A DSL for data-driven computational pipelines

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Biopython - Official git repository for Biopython (originally converted from CVS)

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

galaxy_ng - Ansible Galaxy Server - Issues on https://forum.ansible.com Docs on https://galaxy-ng.readthedocs.io/

ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers

rnaseq-nf - A proof of concept of RNAseq pipeline

orfipy - Fast and flexible ORF finder

mag - Assembly and binning of metagenomes

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow

configs - Config files used to define parameters specific to compute environments at different Institutions