Rust-Bio
Plume
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Rust-Bio | Plume | |
---|---|---|
9 | 18 | |
1,494 | 2,062 | |
2.3% | 0.4% | |
6.7 | 5.2 | |
12 days ago | 3 months ago | |
Rust | Rust | |
MIT License | GNU Affero General Public License v3.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Rust-Bio
- Bioinformatics Data Structures in Rust
- Bioinformatics with Rust
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bioinformatic libraries and zig?
Does anyone know of zig native libraries for bioinformatics (here is a Rust example https://rust-bio.github.io/ )? It seems as though one could pull in a lot of bioinformatics C libraries such as done with https://github.com/brentp/hts-zig.
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Proteomics search engine written in Rust
e.g. Rust-Bio
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What are your top 3-5 programming languages and why?
I would start with the book and then rust-bio library. Rust is a pretty low level language compared to R/Python. It’s an especially good fit for writing efficient tools that make use of the kinds of algorithms / data structures that are implemented in rust-bio.
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I have to admit. The free code camp course is a bit more sparing than I would have preferred. How did everyone learn Rust?
Absolutely! It already is, e.g., https://github.com/rust-bio/rust-bio. I'm moving from the academia/nonprofit world into industry bioinformatics, and I intend to use Rust as much as possible. I've already replaced as much of my Python as possible with Rust. I feel I'm able to create larger, more complex programs with Rust because I have the compiler to keep me from making common mistakes that are so easy to make in dynamically typed languages like Perl and Python. It might take longer to write a program initially, but I've started to create a library of functions I can paste together to do things like parse a positive integer, find a bunch of files with a certain file extension, search through data for a pattern, parse CSV files, etc. Writing my latest book has provided even more common patterns I keep finding I use over and over.
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Is learning Rust and systems programming through the books Rust in Action and Crafting Interpreters a good idea?
I think there is huge potential for Rust in bioinformatics, and there are already some great projects like https://rust-bio.github.io/. It seems industry is also hiring for these skills. This Nature article is a little old, but also covers why people in the field are looking for greater safety and performance. It's relatively easy to write a Python program to do bio stuff, but it's also very easy to get lots of things wrong or for the resulting program to be slow and/or impossible to extend and maintain. In the long run, I think it makes sense to write in Rust. Perl was king in biofx when I started, and I would not have predicted it being displaced by Python, so there's good reason to believe that Python may one day be eclipsed by Rust.
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Whats your favourite open source Rust project that needs more recognition?
Well, someone mentioned https://rust-bio.github.io/
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How can one make Rust excel in the Sciences
So generally stuff in this maths/numerical space. The term is a bit deceptive because it rarely means domain-specific science libraries like rust-bio even thought that might be what you think when you hear "scientific computing".
Plume
- Blogging while Keeping My Data Secure
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Announcing crate activitypub-federation 0.4.0: Major rewrite with improvements to usability and documentation
Plume
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Qué es el Fediverso?
Plume (Blog) - https://joinplu.me/
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Which CMS do you prefer?
You can try out Plume or Writefreely. One is in Rust and the other is in Go. They both also support ActivityPub.
- Minimalist self hosted apps
- Using Mastodon to power my blog comments
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Alternative implementations
Plume - Blogging platform.
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Planning to make a video on cool Rust apps focused on the end user. Make recommendations!
Social Media: Lemmy (Reddit Clone w/ Federation), Plume (Blogging)
- Plume – a federated blogging engine in Rust
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Open source, self hosted, multi user(preferably with logins or such) alternative to Tumblr?
WriteFreely or Plume
What are some alternatives?
dash - Data Apps & Dashboards for Python. No JavaScript Required.
WriteFreely - A clean, Markdown-based publishing platform made for writers. Write together and build a community.
kanidm - Kanidm: A simple, secure and fast identity management platform
writefreely.el - *Frictionless* blogging with Org Mode. No setup required.
clickhouse-rs - Asynchronous ClickHouse client library for Rust programming language.
WordPress - WordPress, Git-ified. This repository is just a mirror of the WordPress subversion repository. Please do not send pull requests. Submit pull requests to https://github.com/WordPress/wordpress-develop and patches to https://core.trac.wordpress.org/ instead.
GeoRust - Geospatial primitives and algorithms for Rust
PluXml - A CMS to create lightweight websites with ease and without database.
Rhai - Rhai - An embedded scripting language for Rust.
Noddity - It's a blog, it's a wiki, it's a fast CMS!
cycle - Modern and safe symbolic mathematics
Bludit - Simple, Fast, Secure, Flat-File CMS