rosalind
Bioinformatics library for DNA, RNA and protein sequence analysis. Based on the exercises of Rosalind website. (by agusotto96)
biotite
A comprehensive library for computational molecular biology (by biotite-dev)
Our great sponsors
| rosalind | biotite | |
|---|---|---|
| 1 | 2 | |
| 0 | 554 | |
| - | 2.0% | |
| 3.4 | 8.7 | |
| 12 months ago | 1 day ago | |
| Rust | Python | |
| - | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rosalind
Posts with mentions or reviews of rosalind.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Problem: exhausting when statement with sealed interface and generics
You can have a look at the project I'm working on if you are interested :) https://github.com/agusotto96/rosalind
biotite
Posts with mentions or reviews of biotite.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-04-28.
-
Journey into bioinformatics
For bioinformatics in Python, the BioPython library (https://biopython.org/) is commonly used. An alternative to this package is Biotite (https://www.biotite-python.org/), a package I am maintaining.
-
What bioinformatics software can i give my contribute?
If you like programming in Python, you could contribute to Biotite (https://www.biotite-python.org/). You may have a look at the open issues at https://github.com/biotite-dev/biotite/issues or the projects at https://github.com/biotite-dev/biotite/projects. If you are interested in a project, you can get in contact via Mail or our Discord channel (https://discord.gg/cUjDguF).
What are some alternatives?
When comparing rosalind and biotite you can also consider the following projects:
Biopython - Official git repository for Biopython (originally converted from CVS)
3DFI - The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
seqtk - Toolkit for processing sequences in FASTA/Q formats
Clairvoyante - Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
CNApy - An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!