rnaseq-nf
A proof of concept of RNAseq pipeline (by nextflow-io)
rnatoy
A proof of concept RNA-Seq pipeline with Nextflow (by nextflow-io)
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| rnaseq-nf | rnatoy | |
|---|---|---|
| 1 | 1 | |
| 62 | 28 | |
| - | - | |
| 5.8 | 0.0 | |
| 13 days ago | over 3 years ago | |
| Nextflow | Nextflow | |
| Mozilla Public License 2.0 | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rnaseq-nf
Posts with mentions or reviews of rnaseq-nf.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Snakemake vs. nf vs. CWL
For example look at: https://github.com/nextflow-io/rnaseq-nf/blob/master/nextflow.config#L39
rnatoy
Posts with mentions or reviews of rnatoy.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Nextflow RNA-seq pipeline
While running the https://github.com/nextflow-io/rnatoy/blob/master/main.nf pipeline, it throws me an error at line 64 : No such variable: genome. I have tried googling this error but I haven't found anything helpful so far.
What are some alternatives?
When comparing rnaseq-nf and rnatoy you can also consider the following projects:
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
configs - Config files used to define parameters specific to compute environments at different Institutions
patterns - A curated collection of Nextflow implementation patterns
rare-disease-wf - (WIP) best-practices workflow for rare disease