rnaseq-nf VS patterns

Compare rnaseq-nf vs patterns and see what are their differences.

rnaseq-nf

A proof of concept of RNAseq pipeline (by nextflow-io)

patterns

A curated collection of Nextflow implementation patterns (by nextflow-io)
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rnaseq-nf patterns
1 1
61 314
- 1.0%
5.8 4.5
5 days ago 4 months ago
Nextflow Nextflow
Mozilla Public License 2.0 MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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rnaseq-nf

Posts with mentions or reviews of rnaseq-nf. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning rnaseq-nf yet.
Tracking mentions began in Dec 2020.

patterns

Posts with mentions or reviews of patterns. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning patterns yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing rnaseq-nf and patterns you can also consider the following projects:

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline

rare-disease-wf - (WIP) best-practices workflow for rare disease

configs - Config files used to define parameters specific to compute environments at different Institutions

atacseq - ATAC-seq peak-calling and QC analysis pipeline

mag - Assembly and binning of metagenomes

chipseq - ChIP-seq peak-calling, QC and differential analysis pipeline.