quast VS bio-sequence

Compare quast vs bio-sequence and see what are their differences.

Our great sponsors
  • InfluxDB - Power Real-Time Data Analytics at Scale
  • WorkOS - The modern identity platform for B2B SaaS
  • SaaSHub - Software Alternatives and Reviews
quast bio-sequence
1 0
357 -
3.1% -
0.0 -
7 months ago -
AMPL
GNU General Public License v3.0 or later BSD 3-clause "New" or "Revised" License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

quast

Posts with mentions or reviews of quast. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-01.
  • Deciding on genome assembly software
    6 projects | /r/bioinformatics | 1 Oct 2021
    Have you looked into QUAST for comparison of assemblies? How big is the bacterial community? You may need to do some binning of your contigs to separate them into species specific genomes. I can suggest metaGEM (developed by me! should be online in NAR any day now) for generating MAGs for your bacterial species. Although it currently only supports short reads, it may give you an idea of what the bacterial community looks like. Maybe also look into EukCC for estimating fungal genome completeness and/or EukRep for splitting the contigs according to prokaryotic/eukaryotic provenance. You could also try estimating community composition directly from short read analysis using e.g. mOTUs2, kraken/braken, metaphlan, etc.

bio-sequence

Posts with mentions or reviews of bio-sequence. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning bio-sequence yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing quast and bio-sequence you can also consider the following projects:

RNAlien - RNAlien - unsupervised RNA family model construction

BlastHTTP - Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

cobot - Computational biology toolkit to collaborate with researchers in constructive protein engineering

Genbank - Genbank format tools and parser

bioinformatics-toolkit - A collection of bioinformatics algorithms

Biopython - Official git repository for Biopython (originally converted from CVS)

phybin - Binning (Newick) Phylogenetic Trees by Topology

FormalGrammars - Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

ADPfusionForest - Dynamic programming on tree and forest structures

memexml - Haskell cabal libary for parsing Meme motif finder xml output

MutationOrder - most likely order of mutation events in RNA

EntrezHTTP - Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice