pyCircos
plasmidviewer

pyCircos | plasmidviewer | |
---|---|---|
5 | 1 | |
348 | 22 | |
1.7% | - | |
3.1 | 3.2 | |
8 months ago | about 3 years ago | |
Python | Python | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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pyCircos
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Python packages to prepare publication-quality figures.
pyCircos: https://github.com/ponnhide/pyCircos
- Show HN: Beautiful Circos Plots in Matplotlib
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pyCircos: Beautiful circos plots in matplotlib
Thank you for everyone's comments. I'm glad for getting positive responses from this community. This library provides the way not only for drawing circos plots and for visualizing circular phylogenetic trees. https://github.com/ponnhide/pyCircos/blob/master/img/tree-example.png This function is still in progress; however, I hope it helps your biological science.
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Beautiful circos plots in Python
Here, I made pyCircos that allow drawing circos plots with matplotlib. By using this package, not only circos plots but also complex polar plots can be quickly drawn.
plasmidviewer
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Beautiful circos plots in Python
Thank you for using pyCircos!. As you mentioned, the current label placement function has a lot of room for improvement. Now, I plan to apply the function of the other library, which I'm developing to develop the optimal label placement function that prevents label overlapping. Also, legend rendering is one of the most unusable functions in matplotlib, and I have yet to come up with an implementation of the legend function with high user accessibility.
What are some alternatives?
itermplot - An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).
IP-Link - Visualizing the relationships between different IP from network traffic capture.
