ploomber
NumPy
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ploomber | NumPy | |
---|---|---|
121 | 272 | |
3,369 | 26,290 | |
0.9% | 1.6% | |
7.8 | 10.0 | |
17 days ago | 7 days ago | |
Python | Python | |
Apache License 2.0 | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ploomber
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Show HN: JupySQL – a SQL client for Jupyter (ipython-SQL successor)
- One-click sharing powered by Ploomber Cloud: https://ploomber.io
Documentation: https://jupysql.ploomber.io
Note that JupySQL is a fork of ipython-sql; which is no longer actively developed. Catherine, ipython-sql's creator, was kind enough to pass the project to us (check out ipython-sql's README).
We'd love to learn what you think and what features we can ship for JupySQL to be the best SQL client! Please let us know in the comments!
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Runme – Interactive Runbooks Built with Markdown
For those who don't know, Jupyter has a bash kernel: https://github.com/takluyver/bash_kernel
And you can run Jupyter notebooks from the CLI with Ploomber: https://github.com/ploomber/ploomber
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Rant: Jupyter notebooks are trash.
Develop notebook-based pipelines
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Who needs MLflow when you have SQLite?
Fair point. MLflow has a lot of features to cover the end-to-end dev cycle. This SQLite tracker only covers the experiment tracking part.
We have another project to cover the orchestration/pipelines aspect: https://github.com/ploomber/ploomber and we have plans to work on the rest of features. For now, we're focusing on those two.
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New to large SW projects in Python, best practices to organize code
I recommend taking a look at the ploomber open source. It helps you structure your code and parameterize it in a way that's easier to maintain and test. Our blog has lots of resources about it from testing your code to building a data science platform on AWS.
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A three-part series on deploying a Data Science Platform on AWS
Developing end-to-end data science infrastructure can get complex. For example, many of us might have struggled to try to integrate AWS services and deal with configuration, permissions, etc. At Ploomber, we’ve worked with many companies in a wide range of industries, such as energy, entertainment, computational chemistry, and genomics, so we are constantly looking for simple solutions to get them started with Data Science in the cloud.
- Ploomber Cloud - Parametrizing and running notebooks in the cloud in parallel
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Is Colab still the place to go?
If you like working locally with notebooks, you can run via the free tier of ploomber, that'll allow you to get the Ram/Compute you need for the bigger models as part of the free tier. Also, it has the historical executions so you don't need to remember what you executed an hour later!
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Alternatives to nextflow?
It really depends on your use cases, I've seen a lot of those tools that lock you into a certain syntax, framework or weird language (for instance Groovy). If you'd like to use core python or Jupyter notebooks I'd recommend Ploomber, the community support is really strong, there's an emphasis on observability and you can deploy it on any executor like Slurm, AWS Batch or Airflow. In addition, there's a free managed compute (cloud edition) where you can run certain bioinformatics flows like Alphafold or Cripresso2
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Saving log files
That's what we do for lineage with https://ploomber.io/
NumPy
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Dot vs Matrix vs Element-wise multiplication in PyTorch
In NumPy with @, dot() or matmul():
- NumPy 2.0.0 Beta1
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Element-wise vs Matrix vs Dot multiplication
In NumPy with * or multiply(). ` or multiply()` can multiply 0D or more D arrays by element-wise multiplication.
- JSON dans les projets data science : Trucs & Astuces
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JSON in data science projects: tips & tricks
Data science projects often use numpy. However, numpy objects are not JSON-serializable and therefore require conversion to standard python objects in order to be saved:
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Introducing Flama for Robust Machine Learning APIs
numpy: A library for scientific computing in Python
- help with installing numpy, please
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A Comprehensive Guide to NumPy Arrays
Python has become a preferred language for data analysis due to its simplicity and robust library ecosystem. Among these, NumPy stands out with its efficient handling of numerical data. Let’s say you’re working with numbers for large data sets—something Python’s native data structures may find challenging. That’s where NumPy arrays come into play, making numerical computations seamless and speedy.
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Why do all the popular projects use relative imports in __init__ files if PEP 8 recommends absolute?
I was looking at all the big projects like numpy, pytorch, flask, etc.
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NumPy 2.0 development status & announcements: major C-API and Python API cleanup
I wish the NumPy devs would more thoroughly consider adding full fluent API support, e.g. x.sqrt().ceil(). [Issue #24081]
What are some alternatives?
Kedro - Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.
SymPy - A computer algebra system written in pure Python
papermill - 📚 Parameterize, execute, and analyze notebooks
Pandas - Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
dagster - An orchestration platform for the development, production, and observation of data assets.
blaze - NumPy and Pandas interface to Big Data
dvc - 🦉 ML Experiments and Data Management with Git
SciPy - SciPy library main repository
argo - Workflow Engine for Kubernetes
Numba - NumPy aware dynamic Python compiler using LLVM
MLflow - Open source platform for the machine learning lifecycle
Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).