phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes (by biobakery)
kneaddata
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments. (by biobakery)
| phylophlan | kneaddata | |
|---|---|---|
| 1 | 1 | |
| 133 | 116 | |
| 0.8% | 2.6% | |
| 6.5 | 6.4 | |
| 3 months ago | 25 days ago | |
| Python | Python | |
| MIT License | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
phylophlan
Posts with mentions or reviews of phylophlan.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-16.
-
PhyloPhlAN Tutorial?
I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.
kneaddata
Posts with mentions or reviews of kneaddata.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How to match up names of read pairs in constant memory?
I have, uh, a few of those files. But I've done https://github.com/biobakery/kneaddata/pull/16 and I think I'm good now!
What are some alternatives?
When comparing phylophlan and kneaddata you can also consider the following projects:
pyCircos - python Circos
tech-debt - Technical debt happens when low code quality slows new developments : you have to pay time interests. TechDebt allows you to quantify and track your technical debt.
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
empress - A fast and scalable phylogenetic tree viewer for microbiome data analysis
PySnapStories - A Python script to download public Snapchat user stories from verified accounts, subjects and Map events.