org-pdftools VS nov.el

An alternative is to open PDFs, from Zotero or from anywhere else, with Emacs' pdf-tools (https://github.com/vedang/pdf-tools). If you annotate the pdf, those annotations are part of the pdf. And you can also use org-noter (https://github.com/weirdNox/org-noter) and org-noter-pdftools (https://github.com/fuxialexander/org-pdftools; but see https://github.com/fuxialexander/org-pdftools/issues/93#issuecomment-1493314118 if you use the new org-noter from https://github.com/org-noter/org-noter).

Periodically, I go through the pdfs I've read (I have a collection in Zotero for the stuff I am in the process of reading) and I use org-noter-pdftools (see https://github.com/fuxialexander/org-pdftools ; this is different from, and extends and depends on, org-noter which, by the way, has recently got new maintainers) to extract all annotations in the pdf to a note that is associated to each pdf. One to one mapping here: one pdf file - one .org file for notes. These notes are basically just org(-roam) files that store the annotations for easy searching (see below) and to allow my linking to specific, individual, highlights (or text annotations). I think that initially setting everything up to my satisfaction was a little bit confusing (e.g., the names of some functions I think are the same between org-noter and org-noter-pdftools and sometimes it was unclear to me the differences in functionality between the two packages); but now it works flawlessly. From org-noter-pdftools I specially like how easy it is to get all the highlights, text annotations, etc (not manual scribbling, of course, and see also below for "typewritter" annotations) into an org-roam note that links directly to the exact location in the pdf.

Check out my screencast on org-noter. I don't think anything else comes close to this kind of workflow. Unfortunately it's not production ready yet. There's a related project org-noter--pdftools, I don't recall what it's state is.

First I tried config from here - https://emacs.stackexchange.com/questions/19686/how-to-use-pdf-tools-pdf-view-mode-in-emacs but the package in unmaintained, so I used https://github.com/fuxialexander/org-pdftools

[2] https://github.com/fuxialexander/org-pdftools

bddean's ereader and nov.el look appealing, especially with nov-xwidget.el for formatting on the latter.

I'm one of those weird users who works in both, and I've also never really understood the need to pick a side. I initially used emacs for years, and now I've used both for years. I also don't pick a side in the tea and coffee debate, sometimes I want rooibos and others espresso.

Admittedly, my emacs usage at this point is largely to treat it as a collection of distinct apps; fire up in nov-mode¹ mode to read books, fire up in magit-status² to mangle git repository, etc. It really feels like there are a collection of best of breed apps that just happen to built on emacs as a toolkit, most of which are fully functional without buying in to emacs for life(not that I'm saying there is anything wrong with that).

The only time I really use it as an actual editing tool is when I'm working on documentation, and that is largely because I like being able to see inline screenshots in that instance.

¹ https://github.com/wasamasa/nov.el

² https://magit.vc/

It has been considered and rejected due to the inherent complexity: https://github.com/wasamasa/nov.el/issues/4