mag
SqueezeMeta
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mag | SqueezeMeta | |
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2 | 1 | |
182 | 335 | |
4.4% | - | |
9.5 | 6.6 | |
5 days ago | 29 days ago | |
Nextflow | C | |
MIT License | GNU General Public License v3.0 only |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
mag
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How do you use Termux?
So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
- Is it possible to assemble a complete bacterial genome using short reads?
SqueezeMeta
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Conda/miniconda output and error files creation
Give it a look https://github.com/jtamames/SqueezeMeta
What are some alternatives?
atlas - Manage your database schema as code
ttyplot - a realtime plotting utility for terminal/console with data input from stdin
nextflow - A DSL for data-driven computational pipelines
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
drep - Rapid comparison and dereplication of genomes
spades - SPAdes Genome Assembler
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Atlas - 🚀 An open and lightweight modification to Windows, designed to optimize performance, privacy and security.
bgfx - Cross-platform, graphics API agnostic, "Bring Your Own Engine/Framework" style rendering library.