configs
Config files used to define parameters specific to compute environments at different Institutions (by nf-core)
rnaseq-nf
A proof of concept of RNAseq pipeline (by nextflow-io)
Our great sponsors
| configs | rnaseq-nf | |
|---|---|---|
| 1 | 1 | |
| 77 | 62 | |
| - | - | |
| 9.7 | 5.8 | |
| 5 days ago | 11 days ago | |
| Nextflow | Nextflow | |
| MIT License | Mozilla Public License 2.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
configs
Posts with mentions or reviews of configs.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Why does it feels impossible to set up github nextflow pipeline without a root?
To pick a random example config file (https://github.com/nf-core/configs/blob/master/conf/cambridge.config) - they have specified that singularity should be used, that the cluster's job scheduler is slurm and the maximum memory/time/cpus.
rnaseq-nf
Posts with mentions or reviews of rnaseq-nf.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Snakemake vs. nf vs. CWL
For example look at: https://github.com/nextflow-io/rnaseq-nf/blob/master/nextflow.config#L39
What are some alternatives?
When comparing configs and rnaseq-nf you can also consider the following projects:
argo-events - Event-driven Automation Framework for Kubernetes
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
patterns - A curated collection of Nextflow implementation patterns
rare-disease-wf - (WIP) best-practices workflow for rare disease
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
mag - Assembly and binning of metagenomes