mag
atlas
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mag | atlas | |
---|---|---|
2 | 67 | |
182 | 4,903 | |
4.4% | 5.6% | |
9.5 | 9.8 | |
24 days ago | 7 days ago | |
Nextflow | Go | |
MIT License | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
mag
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How do you use Termux?
So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
- Is it possible to assemble a complete bacterial genome using short reads?
atlas
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Pgroll: zero-downtime, undoable, schema migrations for Postgres
Check out: https://github.com/ariga/atlas
(I'm one of the authors of this project).
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Show HN: Postgres Language Server
fwiw, I personally am interested in this approach too[0]. I keep running into roadblocks around the ordering of events and some of the hairy issues around "destructive" actions (eg: renaming columns). i think we can get there, especially once we make progress with this LSP.
There are other notable mentions in this space:
Reshape: https://fabianlindfors.se/blog/schema-migrations-in-postgres...
Atlas: https://atlasgo.io/
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Database migration tool
Atlas: https://github.com/ariga/atlas. It can be integrated with any ORM, but also has an official one for GORM: https://atlasgo.io/guides/orms/gorm
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Queryx: An Open-Source Go ORM with Automatic Schema Management
Run the queryx db:create command to create a PostgreSQL database, and then run queryx db:migrate to automatically create the database migration files and database structure. Queryx’s database schema management is built upon Atlas.
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Tool for generating automatic migrations/schema diff
One of https://atlasgo.io's creators here.
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Prisma like PGX Auto migration library
In this case, I'd recommend you to check Atlas: https://github.com/ariga/atlas
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Quickly visualize your Django schemas with DjangoViz
My name is Rotem, I'm one of the creators of Atlas (https://atlasgo.io) a modern open-source schema management tool. Recently one of our engineers created a cool Django plugin that creates beautiful (in my eyes at least ;-)) and shareable ERDs from your Django data models.
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Is there a similar tool or alternative in Go like strong_migrations?
Yes, there is: Atlas! https://atlasgo.io / https://github.com/ariga/atlas.
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How to run DB migrations in CICD
Hi there You should take a look at Atlas - https://atlasgo.io which can help your team in many aspects of CI/ CD for databases : * CI - detect (and prevent) risky / incorrect migrations automatically * CD - support for modern deployment infrastructure (terraform, helm, etc)
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How do you handle migrations ?
You might want to check out Atlas. It provides automatic migration planning for GORM, and has various guides on how deploying schema migration on the popular platform and tools, such as Helm, Kubernetes and ECS.
What are some alternatives?
SqueezeMeta - A complete pipeline for metagenomic analysis
datahub - The Metadata Platform for your Data Stack
nextflow - A DSL for data-driven computational pipelines
migrate - Database migrations. CLI and Golang library.
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sqlc - Generate type-safe code from SQL
spades - SPAdes Genome Assembler
InfluxDB - Scalable datastore for metrics, events, and real-time analytics
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
skeema - Declarative pure-SQL schema management for MySQL and MariaDB
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
pogreb - Embedded key-value store for read-heavy workloads written in Go