jupytext
codebraid
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jupytext | codebraid | |
---|---|---|
20 | 4 | |
6,410 | 361 | |
- | - | |
8.9 | 5.2 | |
about 1 month ago | 6 months ago | |
Python | Python | |
MIT License | BSD 3-clause "New" or "Revised" License |
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jupytext
- The Jupyter+Git problem is now solved
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Do you git commit jupyter notebooks?
Jupytext (https://github.com/mwouts/jupytext) has been designed exactly for this
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The hatred towards jupyter notebooks
jupytext is your friend.
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Edit notebooks in Google cloud
So if you run your own jupyter server, -jupy+text can be a great workflow : it takes your notebook synchronized with other formats (python file, makdown, ...), so you can edit your py/md file with neovim, and refresh the browser to execute the notebook.
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Rant: Jupyter notebooks are trash.
Automatically convert ipynb files to py when saving them on JupyterLab
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Two questions regarding working with jupyter notebooks (git, vim)
I don't use Jupyter so I don't know for sure, but on a quick glance you might want to look at https://github.com/mwouts/jupytext to see if that could help at all.
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JupyterLite is a JupyterLab distribution that runs in the browser
The format is only partially invented, it follows Jupytext [0], but adds support for cell metadata. There is no obvious way to get that in fenced codeblocks, especially with the ability to spread it over multiple lines so it plays well with version control.
One more consideration is that it's not "Markdown with code blocks interspersed", one might as well use plaintext or AsciiDoc.
Of course there are tradeoffs.. I wish I had more time to work on it.
[0]: https://github.com/gzuidhof/starboard-notebook/blob/master/d...
[1]: https://github.com/mwouts/jupytext
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Many write research papers in R Markdown - What is the alternative setup in Python?
Using jupytext (allows you to open .md files as notebooks) + jupyter gives you pretty much the same experience. The main issue is that the cell's output will be discarded. To fix it, you can use ploomber to generate an output HTML, so the workflow goes like this:
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Jupyter Notebooks.
First, the format. The ipynb format does not play nicely with git since it stores the cell's source code and output in the same file. But Jupyter has built-in mechanisms to allow other formats to look like notebooks. For example, here's a library that allows you to store notebooks on a postgres database (I know this isn't practical, but it's a great example). To give more practical advice, jupytext allows you to open .py files as notebooks. So you can develop interactively but in the backend, you're storing .py files.
codebraid
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Literate DevOps
If you want Markdown instead of Org Mode, Codebraid is great.
https://github.com/gpoore/codebraid
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[D] 7 years since Norm Matloff's blog post "STATISTICS: LOSING GROUND TO CS, LOSING IMAGE AMONG STUDENTS". How has the statistics vs CS situation evolved?
Fortunately, literate programming is a thing, so there are still tools for that. If you want PDF/HTML output facilities, it looks like CodeBraid is the way to go. It uses the Pandoc framework, so you can do all kinds of neat things with it.
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R Markdown: The Definitive Guide
For the Python in markdown case, you might be interested in one of my projects that allows executable Python code (including optional Jupyter kernel support) in Pandoc markdown: https://github.com/gpoore/codebraid. Pandoc does all the document parsing (there is no regex preprocessor for extracting code), so converting markdown to markdown often works particularly well.
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How I use Pandoc to create programming eBooks
A tool that really helped me was codebraid, it allows me to keep the code and output of said code in sync really easily.
What are some alternatives?
jupyter - An interface to communicate with Jupyter kernels.
mdBook - Create book from markdown files. Like Gitbook but implemented in Rust
rmarkdown - Dynamic Documents for R
sagemaker-run-notebook - Tools to run Jupyter notebooks as jobs in Amazon SageMaker - ad hoc, on a schedule, or in response to events
Pluto.jl - 🎈 Simple reactive notebooks for Julia
nbdev - Create delightful software with Jupyter Notebooks
Neptune.jl - Simple (Pluto-based) non-reactive notebooks for Julia
papermill - 📚 Parameterize, execute, and analyze notebooks
gedit-plugin-markdown_preview - A gedit plugin previewing markdown (.md) documents
nbdime - Tools for diffing and merging of Jupyter notebooks.
bert - TensorFlow code and pre-trained models for BERT