heatitup VS collapse-duplication

Compare heatitup vs collapse-duplication and see what are their differences.

collapse-duplication

Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations. (by GregorySchwartz)
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heatitup collapse-duplication
- -
- 0
- -
- 0.0
- almost 5 years ago
Haskell
GNU General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

heatitup

Posts with mentions or reviews of heatitup. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning heatitup yet.
Tracking mentions began in Dec 2020.

collapse-duplication

Posts with mentions or reviews of collapse-duplication. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning collapse-duplication yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing heatitup and collapse-duplication you can also consider the following projects:

heatitup-complete - Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.

normalize - normalize

hyraxAbif - ABIF parser, writer and generator

hierarchical-spectral-clustering - Hierarchical spectral clustering of a graph.

subsample - Subsample data from a uniform distribution so two different statuses for the same entity have the same number of samples.

differential - Finds out whether an entity comes from different distributions (statuses).

birch-beer - Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.

too-many-cells - Cluster single cells and analyze cell clade relationships with colorful visualizations.

tex-join-bib - Compile separate tex files with the same bibliography.

integreat - Integrate difference data sources and optionally perform differential integration.