dvc
ploomber
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dvc | ploomber | |
---|---|---|
108 | 121 | |
13,093 | 3,369 | |
1.3% | 0.9% | |
9.7 | 7.8 | |
7 days ago | 15 days ago | |
Python | Python | |
Apache License 2.0 | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
dvc
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Why bad scientific code beats code following "best practices"
What you’re describing sounds like DVC (at a higher-ish—80%-solution level).
https://dvc.org/
See pachyderm too.
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First 15 Open Source Advent projects
10. DVC by Iterative | Github | tutorial
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Exploring Open-Source Alternatives to Landing AI for Robust MLOps
Platforms such as MLflow monitor the development stages of machine learning models. In parallel, Data Version Control (DVC) brings version control system-like functions to the realm of data sets and models.
- ML Experiments Management with Git
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Git Version Controlled Datasets in S3
I was using DVC (https://dvc.org/) for some time to help solve this but it was getting hard to manage the storage connections and I would run into cache issues a lot, but this solves it using git-lfs itself.
- Ask HN: How do your ML teams version datasets and models?
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Exploring MLOps Tools and Frameworks: Enhancing Machine Learning Operations
DVC (Data Version Control):
- Evaluate and Track Your LLM Experiments: Introducing TruLens for LLMs
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[D] Is there a tool to keep track of my ML experiments?
I have been using DVC and MLflow since then DVC had only data tracking and MLflow only model tracking. I can say both are awesome now and maybe the only factor I would like to mention is that IMO, MLflow is a bit harder to learn while DVC is just a git practically.
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Where do I best store my test data when using github for code?
I use DVC, which works decently well and can be hooked into Git.
ploomber
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Show HN: JupySQL – a SQL client for Jupyter (ipython-SQL successor)
- One-click sharing powered by Ploomber Cloud: https://ploomber.io
Documentation: https://jupysql.ploomber.io
Note that JupySQL is a fork of ipython-sql; which is no longer actively developed. Catherine, ipython-sql's creator, was kind enough to pass the project to us (check out ipython-sql's README).
We'd love to learn what you think and what features we can ship for JupySQL to be the best SQL client! Please let us know in the comments!
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Runme – Interactive Runbooks Built with Markdown
For those who don't know, Jupyter has a bash kernel: https://github.com/takluyver/bash_kernel
And you can run Jupyter notebooks from the CLI with Ploomber: https://github.com/ploomber/ploomber
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Rant: Jupyter notebooks are trash.
Develop notebook-based pipelines
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Who needs MLflow when you have SQLite?
Fair point. MLflow has a lot of features to cover the end-to-end dev cycle. This SQLite tracker only covers the experiment tracking part.
We have another project to cover the orchestration/pipelines aspect: https://github.com/ploomber/ploomber and we have plans to work on the rest of features. For now, we're focusing on those two.
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New to large SW projects in Python, best practices to organize code
I recommend taking a look at the ploomber open source. It helps you structure your code and parameterize it in a way that's easier to maintain and test. Our blog has lots of resources about it from testing your code to building a data science platform on AWS.
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A three-part series on deploying a Data Science Platform on AWS
Developing end-to-end data science infrastructure can get complex. For example, many of us might have struggled to try to integrate AWS services and deal with configuration, permissions, etc. At Ploomber, we’ve worked with many companies in a wide range of industries, such as energy, entertainment, computational chemistry, and genomics, so we are constantly looking for simple solutions to get them started with Data Science in the cloud.
- Ploomber Cloud - Parametrizing and running notebooks in the cloud in parallel
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Is Colab still the place to go?
If you like working locally with notebooks, you can run via the free tier of ploomber, that'll allow you to get the Ram/Compute you need for the bigger models as part of the free tier. Also, it has the historical executions so you don't need to remember what you executed an hour later!
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Alternatives to nextflow?
It really depends on your use cases, I've seen a lot of those tools that lock you into a certain syntax, framework or weird language (for instance Groovy). If you'd like to use core python or Jupyter notebooks I'd recommend Ploomber, the community support is really strong, there's an emphasis on observability and you can deploy it on any executor like Slurm, AWS Batch or Airflow. In addition, there's a free managed compute (cloud edition) where you can run certain bioinformatics flows like Alphafold or Cripresso2
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Saving log files
That's what we do for lineage with https://ploomber.io/
What are some alternatives?
MLflow - Open source platform for the machine learning lifecycle
Kedro - Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.
lakeFS - lakeFS - Data version control for your data lake | Git for data
papermill - 📚 Parameterize, execute, and analyze notebooks
Activeloop Hub - Data Lake for Deep Learning. Build, manage, query, version, & visualize datasets. Stream data real-time to PyTorch/TensorFlow. https://activeloop.ai [Moved to: https://github.com/activeloopai/deeplake]
dagster - An orchestration platform for the development, production, and observation of data assets.
delta - An open-source storage framework that enables building a Lakehouse architecture with compute engines including Spark, PrestoDB, Flink, Trino, and Hive and APIs
argo - Workflow Engine for Kubernetes
aim - Aim 💫 — An easy-to-use & supercharged open-source experiment tracker.
git-submodules - Git Submodule alternative with equivalent features, but easier to use and maintain.
nbdev - Create delightful software with Jupyter Notebooks