phantasm
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes (by dr-joe-wirth)
misp-taxonomies
Taxonomies used in MISP taxonomy system and can be used by other information sharing tool. (by MISP)
| phantasm | misp-taxonomies | |
|---|---|---|
| 2 | 1 | |
| 24 | 270 | |
| - | 1.1% | |
| 8.6 | 8.5 | |
| over 1 year ago | 20 days ago | |
| Python | Python | |
| MIT License | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
phantasm
Posts with mentions or reviews of phantasm.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-04-02.
- Is there any way to easily create a docker image that has both python and R?
-
PHANTASM: new software for microbial taxonomy
The easiest way to try it out PHANTASM is to use the Docker image. The source code is also available on github.
misp-taxonomies
Posts with mentions or reviews of misp-taxonomies.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-06-20.
-
Licensing API response data
Some repositories are licensed without having any code: Example with datasets: https://github.com/MISP/misp-taxonomies Example with md documentation: https://github.com/tldr-pages/tldr/blob/main/LICENSE.md
What are some alternatives?
When comparing phantasm and misp-taxonomies you can also consider the following projects:
GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
MOSP - A collaborative platform for creating, editing and sharing JSON objects.
drep - Rapid comparison and dereplication of genomes
pyani - Application and Python module for average nucleotide identity analyses of microbes.
misp-galaxy - Clusters and elements to attach to MISP events or attributes (like threat actors)