bowtie2 VS seq

Compare bowtie2 vs seq and see what are their differences.


A fast and sensitive gapped read aligner (by BenLangmead)


A high-performance, Pythonic language for bioinformatics (by seq-lang)
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bowtie2 seq
1 15
500 634
- -
8.3 0.7
14 days ago 2 months ago
C++ C++
GNU General Public License v3.0 only Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.


Posts with mentions or reviews of bowtie2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-04-25.


Posts with mentions or reviews of seq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-20.

What are some alternatives?

When comparing bowtie2 and seq you can also consider the following projects:

STAR - RNA-seq aligner

Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

bwa-mem2 - The next version of bwa-mem

wyng-backup - Fast Time Machine-like backups for logical volumes

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Biopython - Official git repository for Biopython (originally converted from CVS)

TensorComprehensions - A domain specific language to express machine learning workloads.

bioconda-recipes - Conda recipes for the bioconda channel.

adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

qore - Qore Programming Language

seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang

megahit - Ultra-fast and memory-efficient (meta-)genome assembler