|14 days ago||2 months ago|
|GNU General Public License v3.0 only||Apache License 2.0|
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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Computationally intensive steps in RNA-seq analysis
2 projects | reddit.com/r/bioinformatics | 25 Apr 2021
A Python-based programming language for high-performance computational genomics
> Seq is a Python-compatible language, and the vast majority of Python programs should work without any modifications
The programming language itself and all documentation can be found at https://seq-lang.org/ .
Hacker News top posts: Sep 15, 2021
3 projects | reddit.com/r/hackerdigest | 15 Sep 2021
Seq: A programming language for high-performance computational genomics\ (17 comments)
Seq: A programming language for high-performance computational genomics
9 projects | news.ycombinator.com | 15 Sep 2021
They support both, and will deprecate Python 2 style soon.9 projects | news.ycombinator.com | 15 Sep 2021
What are some alternatives?
STAR - RNA-seq aligner
Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).
bwa-mem2 - The next version of bwa-mem
wyng-backup - Fast Time Machine-like backups for logical volumes
edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Biopython - Official git repository for Biopython (originally converted from CVS)
TensorComprehensions - A domain specific language to express machine learning workloads.
bioconda-recipes - Conda recipes for the bioconda channel.
adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
qore - Qore Programming Language
seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang
megahit - Ultra-fast and memory-efficient (meta-)genome assembler