bowtie VS seq

Compare bowtie vs seq and see what are their differences.

bowtie

An ultrafast memory-efficient short read aligner (by BenLangmead)

seq

A high-performance, Pythonic language for bioinformatics (by seq-lang)
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bowtie seq
1 15
252 634
- -
10.0 0.7
almost 2 years ago over 1 year ago
C++ C++
GNU General Public License v3.0 or later Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bowtie

Posts with mentions or reviews of bowtie. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-09-24.

seq

Posts with mentions or reviews of seq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-20.

What are some alternatives?

When comparing bowtie and seq you can also consider the following projects:

Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

wyng-backup - Fast Time Machine-like backups for logical volumes & disk images

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Biopython - Official git repository for Biopython (originally converted from CVS)

bioconda-recipes - Conda recipes for the bioconda channel.

seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang

poly - A Go package for engineering organisms.

qore - Qore Programming Language

bowtie2 - A fast and sensitive gapped read aligner

TensorComprehensions - A domain specific language to express machine learning workloads.

nimconf2021 - Slides for Nimconf21