bionix VS porcupine-core

Compare bionix vs porcupine-core and see what are their differences.

bionix

Functional highly reproducible bioinformatics pipelines (by PapenfussLab)

porcupine-core

Express parametrable, composable and portable data pipelines (by YPares)
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bionix porcupine-core
1 1
74 90
- -
3.7 0.0
6 months ago about 2 years ago
Nix Haskell
BSD 3-clause "New" or "Revised" License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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bionix

Posts with mentions or reviews of bionix. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-03.
  • Experiences with workflow managers implemented in Haskell (funflow, porcupine, bioshake, ?)
    5 projects | /r/haskell | 3 Oct 2021
    I wasn't satisfied with this and wanted the software to be managed too, so we ended up working on BioNix (https://github.com/PapenfussLab/bionix) which does both pipeline execution and software management. This is nice because it makes everything extremely reproducible and removes a lot of the pain of dealing with setting up software etc at various HPC facilities. The down side is Nix isn't typed, so the typing aspect of bioshake was ported on the back of a ADT implementation in Nix, and at least for my work it has caught a fair few mistakes. Of course this isn't Haskell so it doesn't satisfy your criteria, just though it's worth a mention.

porcupine-core

Posts with mentions or reviews of porcupine-core. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-03.

What are some alternatives?

When comparing bionix and porcupine-core you can also consider the following projects:

awesome-pipeline - A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

funflow - Functional workflows

postgrest - REST API for any Postgres database