ViennaRNAParser
samtools
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| ViennaRNAParser | samtools | |
|---|---|---|
| - | 3 | |
| 3 | 1,546 | |
| - | 2.3% | |
| 0.0 | 8.4 | |
| over 6 years ago | 7 days ago | |
| Haskell | C | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ViennaRNAParser
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Tracking mentions began in Dec 2020.
samtools
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BWA MEM with merged paired-end reads and unmerged in the same run.
I don’t know about your first question, but for your second, use “bwa mem -p …” for smart pairing of an interleaved FASTQ/A with both paired end reads and singletons. BWA will recognize whether adjacent reads are paired if they have the same prefix (see here)
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Show a Tanuki with Samtools!
In this post, I'm going to add the command tanuki to Samtools to display a ASCII art(AA) tanuki.
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How do I know if I'm gonna get my module?
Quite a number of bioinformatics related tool that were written in C/C++, eg. (https://github.com/samtools/samtools). But there are also a lot of modern packages for Python / R now
What are some alternatives?
FormalGrammars - Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
seqtk - Toolkit for processing sequences in FASTA/Q formats
hPDB - PDB parser in Haskell
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite
BioHMM - Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
RNAlien - RNAlien - unsupervised RNA family model construction
Forestry - Science and craft of forests
libBigWig - A C library for handling bigWig files
phybin - Binning (Newick) Phylogenetic Trees by Topology
libdna - ♥ Essential Functions for DNA Manipulation
htslib - C library for high-throughput sequencing data formats