UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al.. (by hms-dbmi)
circlize
Circular visualization in R (by jokergoo)
| UpSetR | circlize | |
|---|---|---|
| 4 | 4 | |
| 751 | 958 | |
| 0.7% | - | |
| 0.0 | 3.6 | |
| about 1 month ago | 10 months ago | |
| R | R | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
UpSetR
Posts with mentions or reviews of UpSetR.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-05.
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Visually interesting pathway analysis?
Another package for Upset is UpSetR:: A shiny app is also available online. Complete info us available in their GitHub page.
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How does one create this kind of figure?
Those are good for up to 3 ~4 distinct groups but more than that you should take a peek at upset plots here
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Upset plots in Plotly/Dash?
Want this type of plot: https://github.com/hms-dbmi/UpSetR
- How might you display overlapping binary data other than a Venn diagram?
circlize
Posts with mentions or reviews of circlize.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-05.
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How does one create this kind of figure?
Have you tried a chord diagram using circulize? Circular Visualization in R
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Circular enrichment map - does anyone know how to make these?
Take a look at R package circlize -> https://jokergoo.github.io/circlize_book/book/
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Show HN: PyCirclize – Circular Visualization in Python
From the citation, it looks like circlize was used.
https://github.com/jokergoo/circlize
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Circular visualization in Python (Circos Plot, Chord Diagram)
In R language, circlize is a well-known circular visualization package that is used by many users. Circlize provides many high-level and low-level APIs for circular visualization, and users can write code for circular visualization in a flexible way. On the other hand, there is still no circular visualization package in Python that is as feature-rich and widely used by users as circlize. Therefore, I developed pyCirclize for the purpose of making circlize-like visualization available in Python.
What are some alternatives?
When comparing UpSetR and circlize you can also consider the following projects:
complex-upset - A library for creating complex UpSet plots with ggplot2 geoms
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
ggvenn - Venn Diagram by ggplot2, with really easy-to-use API.
patchwork - The Composer of ggplots
ggsignif - Easily add significance brackets to your ggplots
layer - Create stacked tilted maps
ganttrify - Create beautiful Gantt charts with ggplot2
hexSticker - :sparkles: Hexagon sticker in R