TCGAbiolinks VS bambu

Compare TCGAbiolinks vs bambu and see what are their differences.

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TCGAbiolinks bambu
2 1
272 161
2.6% 5.6%
4.0 5.6
23 days ago 15 days ago
R R
- GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

TCGAbiolinks

Posts with mentions or reviews of TCGAbiolinks. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning TCGAbiolinks yet.
Tracking mentions began in Dec 2020.

bambu

Posts with mentions or reviews of bambu. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning bambu yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing TCGAbiolinks and bambu you can also consider the following projects:

rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

rnaseq - RNA-seq analyses.

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

cosmosR - COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

drugfindR - Repository holding the code for the drugfindR R package

clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

awesome-R - A curated list of awesome R packages, frameworks and software.

ggplot2 - An implementation of the Grammar of Graphics in R