OOK_Audio VS DNABERT

Compare OOK_Audio vs DNABERT and see what are their differences.

OOK_Audio

De Bruijn Sequence WAV File Generator for the HackRF (by nullze)

DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome (by jerryji1993)
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OOK_Audio DNABERT
15 1
12 627
- 1.9%
10.0 3.1
about 2 years ago 11 months ago
Python Python
- Apache License 2.0
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OOK_Audio

Posts with mentions or reviews of OOK_Audio. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-08-13.

DNABERT

Posts with mentions or reviews of DNABERT. We have used some of these posts to build our list of alternatives and similar projects.
  • [D] New to DNABERT
    1 project | /r/MachineLearning | 3 Nov 2023
    If I want to get started, they said it's optional to pre-train (so you can skip to step 3). This is where I got tripped up: "Note that the sequences are in kmer format, so you will need to convert your sequences into that." From what I understand, you need to do this so that all of the sequences are the same length? So kmer=6 means all of the sequences are length 6? Someone suggested that I take the first nucleotide in the promoter and grab 3 nucleotides before and 3 nucleotides after (+/-3 bases). I don't think that's how the kmer thing works though? I tried replicating how I think it works down below (I got confused on the last row of the 'after' df). Please correct me if I'm wrong!

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