GTDBTk VS phantasm

Compare GTDBTk vs phantasm and see what are their differences.

GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)

phantasm

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes (by dr-joe-wirth)
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GTDBTk phantasm
1 2
495 23
1.4% -
6.7 8.6
2 months ago about 1 year ago
Python Python
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

phantasm

Posts with mentions or reviews of phantasm. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-04-02.

What are some alternatives?

When comparing GTDBTk and phantasm you can also consider the following projects:

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

pyani - Application and Python module for average nucleotide identity analyses of microbes.

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

drep - Rapid comparison and dereplication of genomes

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

misp-taxonomies - Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

seurat-docker - Docker images of Seurat

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

pyGenomeViz - A genome visualization python package for comparative genomics

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

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