GEMAP_NCLDV
Genome Mapping Analysis Pipeline for giant viruses (by BenMinch)
sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets. (by sourmash-bio)
| GEMAP_NCLDV | sourmash | |
|---|---|---|
| 1 | 1 | |
| 4 | 491 | |
| - | 1.4% | |
| 10.0 | 9.5 | |
| over 2 years ago | 4 days ago | |
| Python | Python | |
| - | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
GEMAP_NCLDV
Posts with mentions or reviews of GEMAP_NCLDV.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-12-29.
-
Any good meta-transcriptomics pipelines
I developed a pipeline for doing metatranscriptomics with time series data. Check it out here https://github.com/BenMinch/GEMAP_NCLDV
sourmash
Posts with mentions or reviews of sourmash.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-12-29.
-
Any good meta-transcriptomics pipelines
have you seen https://www.nature.com/articles/s41587-019-0209-9?ref=https://githubhelp.com and https://github.com/sourmash-bio/sourmash ?
What are some alternatives?
When comparing GEMAP_NCLDV and sourmash you can also consider the following projects:
biobakery_workflows - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
sequence_align - Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
intertext - Detect and visualize text reuse
rustplus - Rust+ API Wrapper Written in Python for the Game: Rust