GEMAP_NCLDV
Genome Mapping Analysis Pipeline for giant viruses (by BenMinch)
biobakery_workflows
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters. (by biobakery)
| GEMAP_NCLDV | biobakery_workflows | |
|---|---|---|
| 1 | 1 | |
| 4 | 110 | |
| - | 3.6% | |
| 10.0 | 4.6 | |
| over 2 years ago | about 2 months ago | |
| Python | Python | |
| - | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
GEMAP_NCLDV
Posts with mentions or reviews of GEMAP_NCLDV.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-12-29.
-
Any good meta-transcriptomics pipelines
I developed a pipeline for doing metatranscriptomics with time series data. Check it out here https://github.com/BenMinch/GEMAP_NCLDV
biobakery_workflows
Posts with mentions or reviews of biobakery_workflows.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-12-29.
-
Any good meta-transcriptomics pipelines
The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows
What are some alternatives?
When comparing GEMAP_NCLDV and biobakery_workflows you can also consider the following projects:
sourmash - Quickly search, compare, and analyze genomic and metagenomic data sets.
dndserver - Dark and Darker private server implementation written in Python
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
DB-GPT - AI Native Data App Development framework with AWEL(Agentic Workflow Expression Language) and Agents