BioHMM VS samtools

Compare BioHMM vs samtools and see what are their differences.

BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format. (by eggzilla)

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data (by samtools)
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BioHMM samtools
0 3
3 1,532
- 2.3%
0.0 8.4
almost 7 years ago 6 days ago
Haskell C
GNU General Public License v3.0 only GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

BioHMM

Posts with mentions or reviews of BioHMM. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning BioHMM yet.
Tracking mentions began in Dec 2020.

samtools

Posts with mentions or reviews of samtools. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-18.

What are some alternatives?

When comparing BioHMM and samtools you can also consider the following projects:

ViennaRNAParser

rank-product - Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.

vcf - Haskell library to handle VCF (Variant Call Format) files

SelectSequencesFromMSA - Tool to select representative sequences from a multiple sequence alignment

mmtf - MMTF for Haskell

seqtk - Toolkit for processing sequences in FASTA/Q formats

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

hPDB - PDB parser in Haskell

Genbank - Genbank format tools and parser

StockholmAlignment - Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

seqloc - Bio.SeqLoc

phybin - Binning (Newick) Phylogenetic Trees by Topology