BioHMM vs phybin

BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format. (by eggzilla)

Specific Industries Bioinformatics

Source Code

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phybin

Binning (Newick) Phylogenetic Trees by Topology (by rrnewton)

Specific Industries Bioinformatics

Source Code

people.csail.mit.edu

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BioHMM		phybin
	Project
-	Mentions	-
3	Stars	8
-	Growth	-
0.0	Activity	0.0
almost 7 years ago	Latest Commit	about 5 years ago
Haskell	Language	Haskell
GNU General Public License v3.0 only	License	BSD 3-clause "New" or "Revised" License

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

BioHMM

Posts with mentions or reviews of BioHMM. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning BioHMM yet.
Tracking mentions began in Dec 2020.

phybin

Posts with mentions or reviews of phybin. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning phybin yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing BioHMM and phybin you can also consider the following projects:

ViennaRNAParser

rank-product - Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.

Taxonomy - Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

vcf - Haskell library to handle VCF (Variant Call Format) files

ADPfusionForest - Dynamic programming on tree and forest structures

SelectSequencesFromMSA - Tool to select representative sequences from a multiple sequence alignment

BlastHTTP - Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

mmtf - MMTF for Haskell

cobot-tools

hPDB - PDB parser in Haskell

RNAlien - RNAlien - unsupervised RNA family model construction